IL_8JDK_127

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8JDK|1|D|A|3901, 8JDK|1|D|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_127 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0852

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8JDK|1|D|G|3900
8JDK|1|D|A|3901
8JDK|1|D|A|3902
*
8JDK|1|D|U|4558
8JDK|1|D|A|4559
8JDK|1|D|C|4560
8JDK|1|D|C|4561

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain U

60S ribosomal protein L17