IL_8JDK_135

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8JDK|1|D|A|4203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_135 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.0957

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8JDK|1|D|G|4191
8JDK|1|D|A|4192
*
8JDK|1|D|U|4202
8JDK|1|D|A|4203
8JDK|1|D|C|4204

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L10-like

Chain Y

60S ribosomal protein L21

Chain g

60S ribosomal protein L29

Chain t

60S ribosomal protein L36a