IL_8JDK_137

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

8JDK|1|D|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_137 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1944

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8JDK|1|D|G|4291
8JDK|1|D|A|4292
8JDK|1|D|PSU|4293
8JDK|1|D|C|4294
*
8JDK|1|D|G|4316
8JDK|1|D|A|4317
8JDK|1|D|C|4318

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain Y

60S ribosomal protein L21

Chain g

60S ribosomal protein L29

Chain t

60S ribosomal protein L36a