IL_8JDK_140

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGC(PSU)UG*UGA(PSU)CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|G|4400
8JDK|1|D|G|4401
8JDK|1|D|C|4402
8JDK|1|D|PSU|4403
8JDK|1|D|U|4404
8JDK|1|D|G|4405
*
8JDK|1|D|U|4439
8JDK|1|D|G|4440
8JDK|1|D|A|4441
8JDK|1|D|PSU|4442
8JDK|1|D|C|4443
8JDK|1|D|C|4444

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain H

60S ribosomal protein L3

Chain O

60S ribosomal protein L10-like

Chain g

60S ribosomal protein L29