IL_8JDK_163

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8JDK|1|D|A|4656, 8JDK|1|D|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_163 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2322

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8JDK|1|D|U|4641
8JDK|1|D|U|4642
*
8JDK|1|D|A|4655
8JDK|1|D|A|4656
8JDK|1|D|U|4657
8JDK|1|D|G|4658

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain i

60S ribosomal protein L31