IL_8JDK_172

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8JDK|1|D|C|4900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_172 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.3613

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8JDK|1|D|G|4899
8JDK|1|D|C|4900
8JDK|1|D|G|4901
*
8JDK|1|D|C|4920
8JDK|1|D|C|4921

Current chains

Chain D

28S ribosomal RNA

Nearby chains