IL_8JDK_180

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

8JDK|1|E|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_180 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.1634

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8JDK|1|E|C|15
8JDK|1|E|A|16
*
8JDK|1|E|U|62
8JDK|1|E|C|63
8JDK|1|E|G|64

Current chains

Chain E

5S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like

Chain P

60S ribosomal protein L11