IL_8JDK_193
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_193 not in the Motif Atlas
- Homologous match to IL_4V88_389
- Geometric discrepancy: 0.1878
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8JDK|1|w|U|57
8JDK|1|w|C|58
8JDK|1|w|U|59
8JDK|1|w|A|60
8JDK|1|w|A|61
8JDK|1|w|G|62
*
8JDK|1|w|C|86
8JDK|1|w|U|87
8JDK|1|w|G|88
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S6
- Chain AK
- 40S ribosomal protein S24
Coloring options: