IL_8JDK_196

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

8JDK|1|w|G|113, 8JDK|1|w|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_196 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1621

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8JDK|1|w|U|112
8JDK|1|w|G|113
8JDK|1|w|G|114
8JDK|1|w|U|115
*
8JDK|1|w|A|348
8JDK|1|w|A|349

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 5

40S ribosomal protein S8

Chain 8

40S ribosomal protein S11