IL_8JDK_199

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

8JDK|1|w|C|142, 8JDK|1|w|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|G|130
8JDK|1|w|A|141
8JDK|1|w|C|142
8JDK|1|w|U|143
8JDK|1|w|U|144
*
8JDK|1|w|A|175
8JDK|1|w|U|176
8JDK|1|w|G|177
8JDK|1|w|C|178
8JDK|1|w|C|179
8JDK|1|w|G|180
8JDK|1|w|A|181
8JDK|1|w|C|182

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6