IL_8JDK_203

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_203 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3351

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8JDK|1|w|C|188
8JDK|1|w|U|189
8JDK|1|w|G|190
8JDK|1|w|A|191
8JDK|1|w|C|192
*
8JDK|1|w|G|207
8JDK|1|w|G|208
8JDK|1|w|A|209
8JDK|1|w|PSU|210
8JDK|1|w|G|211

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 5

40S ribosomal protein S8