IL_8JDK_215
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAG*CGAGG(A2M)UC
- Length
- 11 nucleotides
- Bulged bases
- 8JDK|1|w|G|588
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_215 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.3671
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8JDK|1|w|G|563
8JDK|1|w|A|564
8JDK|1|w|G|565
*
8JDK|1|w|C|585
8JDK|1|w|G|586
8JDK|1|w|A|587
8JDK|1|w|G|588
8JDK|1|w|G|589
8JDK|1|w|A2M|590
8JDK|1|w|U|591
8JDK|1|w|C|592
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S9
- Chain AQ
- 40S ribosomal protein S30
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