IL_8JDK_217
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGAG(OMG)GCAAGUC*GCUCC
- Length
- 17 nucleotides
- Bulged bases
- 8JDK|1|w|G|600, 8JDK|1|w|U|607
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDK|1|w|G|597
8JDK|1|w|G|598
8JDK|1|w|A|599
8JDK|1|w|G|600
8JDK|1|w|OMG|601
8JDK|1|w|G|602
8JDK|1|w|C|603
8JDK|1|w|A|604
8JDK|1|w|A|605
8JDK|1|w|G|606
8JDK|1|w|U|607
8JDK|1|w|C|608
*
8JDK|1|w|G|635
8JDK|1|w|C|636
8JDK|1|w|U|637
8JDK|1|w|C|638
8JDK|1|w|C|639
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain 6
- 40S ribosomal protein S9
- Chain A
- mRNA
- Chain AJ
- 40S ribosomal protein S23
- Chain AQ
- 40S ribosomal protein S30
- Chain z
- 40S ribosomal protein S2
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