IL_8JDK_243

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

8JDK|1|w|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_243 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2353

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8JDK|1|w|G|1203
8JDK|1|w|A|1204
8JDK|1|w|C|1205
*
8JDK|1|w|G|1693
8JDK|1|w|U|1694
8JDK|1|w|A|1695
8JDK|1|w|C|1696

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AM

40S ribosomal protein S26

Chain B

Transfer RNA; tRNA

Chain z

40S ribosomal protein S2