IL_8JDK_244
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CGGA*U(PSU)G
- Length
- 7 nucleotides
- Bulged bases
- 8JDK|1|w|G|1207
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_244 not in the Motif Atlas
- Geometric match to IL_7A0S_044
- Geometric discrepancy: 0.2531
- The information below is about IL_7A0S_044
- Detailed Annotation
- Intercalated cWW
- Broad Annotation
- Intercalated cWW
- Motif group
- IL_61702.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8JDK|1|w|C|1205
8JDK|1|w|G|1206
8JDK|1|w|G|1207
8JDK|1|w|A|1208
*
8JDK|1|w|U|1691
8JDK|1|w|PSU|1692
8JDK|1|w|G|1693
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain AM
- 40S ribosomal protein S26
- Chain B
- Transfer RNA; tRNA
- Chain z
- 40S ribosomal protein S2
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