IL_8JDK_246

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_246 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.2659

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8JDK|1|w|G|1222
8JDK|1|w|A|1223
8JDK|1|w|G|1224
*
8JDK|1|w|U|1642
8JDK|1|w|PSU|1643
8JDK|1|w|C|1644

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 2

40S ribosomal protein S5

Chain AC

40S ribosomal protein S16

Chain B

Transfer RNA; tRNA