IL_8JDK_256

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GU(PSU)GG*CGA(A2M)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|G|1345
8JDK|1|w|U|1346
8JDK|1|w|PSU|1347
8JDK|1|w|G|1348
8JDK|1|w|G|1349
*
8JDK|1|w|C|1380
8JDK|1|w|G|1381
8JDK|1|w|A|1382
8JDK|1|w|A2M|1383
8JDK|1|w|C|1384

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S3

Chain AD

40S ribosomal protein S17

Chain x

40S ribosomal protein SA

Chain z

40S ribosomal protein S2