IL_8JDK_261

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UUA*UCCCCCAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_261 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.5668

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8JDK|1|w|U|1407
8JDK|1|w|U|1408
8JDK|1|w|A|1409
*
8JDK|1|w|U|1432
8JDK|1|w|C|1433
8JDK|1|w|C|1434
8JDK|1|w|C|1435
8JDK|1|w|C|1436
8JDK|1|w|C|1437
8JDK|1|w|A|1438
8JDK|1|w|A|1439

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S16

Chain AG

40S ribosomal protein S20