IL_8JDK_266
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_266 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.4467
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8JDK|1|w|G|1604
8JDK|1|w|G|1605
8JDK|1|w|G|1606
8JDK|1|w|A|1607
8JDK|1|w|U|1608
8JDK|1|w|C|1609
8JDK|1|w|G|1610
*
8JDK|1|w|C|1629
8JDK|1|w|A|1630
8JDK|1|w|U|1631
8JDK|1|w|G|1632
8JDK|1|w|A|1633
8JDK|1|w|A|1634
8JDK|1|w|C|1635
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S5
- Chain AE
- 40S ribosomal protein S18
- Chain AF
- 40S ribosomal protein S19
- Chain AL
- 40S ribosomal protein S25
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