IL_8JDK_289

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AGA*UA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_289 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.2668

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8JDK|1|D|A|1749
8JDK|1|D|G|1750
8JDK|1|D|A|1751
*
8JDK|1|D|U|1779
8JDK|1|D|A|1780
8JDK|1|D|PSU|1781

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like