IL_8JDK_300

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

8JDK|1|D|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_300 not in the Motif Atlas

Geometric match to IL_7A0S_064

Geometric discrepancy: 0.399

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8JDK|1|D|G|4291
8JDK|1|D|A|4292
8JDK|1|D|PSU|4293
*
8JDK|1|D|A|4317
8JDK|1|D|C|4318

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L29

Chain t

60S ribosomal protein L36a