IL_8JDK_312
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- (OMU)CC(PSU)U(OMU)*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_312 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.2475
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8JDK|1|w|OMU|116
8JDK|1|w|C|117
8JDK|1|w|C|118
8JDK|1|w|PSU|119
8JDK|1|w|U|120
8JDK|1|w|OMU|121
*
8JDK|1|w|A|343
8JDK|1|w|U|344
8JDK|1|w|U|345
8JDK|1|w|C|346
8JDK|1|w|G|347
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 5
- 40S ribosomal protein S8
Coloring options: