IL_8JDK_315

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UUUCGAU*AUG

Length

10 nucleotides

Bulged bases

8JDK|1|w|U|368, 8JDK|1|w|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|U|366
8JDK|1|w|U|367
8JDK|1|w|U|368
8JDK|1|w|C|369
8JDK|1|w|G|370
8JDK|1|w|A|371
8JDK|1|w|U|372
*
8JDK|1|w|A|392
8JDK|1|w|U|393
8JDK|1|w|G|394

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 5

40S ribosomal protein S8

Chain 8

40S ribosomal protein S11

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain W

60S ribosomal protein L19