IL_8JDK_317

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

8JDK|1|w|U|488

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_317 not in the Motif Atlas

Homologous match to IL_8P9A_396

Geometric discrepancy: 0.3746

The information below is about IL_8P9A_396

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8JDK|1|w|U|487
8JDK|1|w|U|488
8JDK|1|w|A|489
*
8JDK|1|w|U|511
8JDK|1|w|A2M|512

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 6

40S ribosomal protein S9

Chain AK

40S ribosomal protein S24