IL_8JDK_319

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAGUCCA*UCCGCGAGG(A2M)UC

Length

19 nucleotides

Bulged bases

8JDK|1|w|G|588

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|G|563
8JDK|1|w|A|564
8JDK|1|w|G|565
8JDK|1|w|U|566
8JDK|1|w|C|567
8JDK|1|w|C|568
8JDK|1|w|A|569
*
8JDK|1|w|U|581
8JDK|1|w|C|582
8JDK|1|w|C|583
8JDK|1|w|G|584
8JDK|1|w|C|585
8JDK|1|w|G|586
8JDK|1|w|A|587
8JDK|1|w|G|588
8JDK|1|w|G|589
8JDK|1|w|A2M|590
8JDK|1|w|U|591
8JDK|1|w|C|592

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S9

Chain AK

40S ribosomal protein S24

Chain AQ

40S ribosomal protein S30