IL_8JDK_329

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

8JDK|1|w|A|1489

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_329 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.1471

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8JDK|1|w|4AC|1337
8JDK|1|w|G|1338
*
8JDK|1|w|C|1488
8JDK|1|w|A|1489
8JDK|1|w|OMG|1490

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S3

Chain A

mRNA

Chain AC

40S ribosomal protein S16

Chain AG

40S ribosomal protein S20

Chain AP

40S ribosomal protein S29

Chain C

Transfer RNA; tRNA

Chain z

40S ribosomal protein S2