IL_8JDL_013

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

8JDL|1|D|G|188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|C|180
8JDL|1|D|C|181
8JDL|1|D|G|182
8JDL|1|D|C|183
8JDL|1|D|U|184
8JDL|1|D|C|185
8JDL|1|D|G|186
8JDL|1|D|U|187
8JDL|1|D|G|188
8JDL|1|D|G|189
*
8JDL|1|D|C|252
8JDL|1|D|G|253
8JDL|1|D|G|254
8JDL|1|D|C|255
8JDL|1|D|G|256

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L13

Chain m

60S ribosomal protein L35

Chain o

60S ribosomal protein L37