IL_8JDL_059

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_059 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0846

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8JDL|1|D|C|1551
8JDL|1|D|G|1552
8JDL|1|D|A|1553
8JDL|1|D|A|1554
8JDL|1|D|G|1555
*
8JDL|1|D|U|1572
8JDL|1|D|G|1573
8JDL|1|D|G|1574
8JDL|1|D|A|1575
8JDL|1|D|G|1576

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain W

60S ribosomal protein L19

Chain u

60S ribosomal protein L37a