IL_8JDL_119

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

G(PSU)CA(A2M)AGU*AA(PSU)GAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|G|3714
8JDL|1|D|PSU|3715
8JDL|1|D|C|3716
8JDL|1|D|A|3717
8JDL|1|D|A2M|3718
8JDL|1|D|A|3719
8JDL|1|D|G|3720
8JDL|1|D|U|3721
*
8JDL|1|D|A|3732
8JDL|1|D|A|3733
8JDL|1|D|PSU|3734
8JDL|1|D|G|3735
8JDL|1|D|A|3736
8JDL|1|D|A|3737
8JDL|1|D|G|3738
8JDL|1|D|C|3739

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain n

60S ribosomal protein L36