IL_8JDL_169

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_169 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3167

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8JDL|1|D|U|4885
8JDL|1|D|C|4886
8JDL|1|D|C|4887
8JDL|1|D|U|4888
8JDL|1|D|G|4889
*
8JDL|1|D|C|4930
8JDL|1|D|G|4931
8JDL|1|D|U|4932
8JDL|1|D|C|4933
8JDL|1|D|A|4934

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain R

60S ribosomal protein L14

Chain T

60S ribosomal protein L13a