IL_8JDL_199

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGGAUAAC*GCUAA(OMU)A(OMC)A

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|w|U|144
8JDL|1|w|G|145
8JDL|1|w|G|146
8JDL|1|w|A|147
8JDL|1|w|U|148
8JDL|1|w|A|149
8JDL|1|w|A|150
8JDL|1|w|C|151
*
8JDL|1|w|G|167
8JDL|1|w|C|168
8JDL|1|w|U|169
8JDL|1|w|A|170
8JDL|1|w|A|171
8JDL|1|w|OMU|172
8JDL|1|w|A|173
8JDL|1|w|OMC|174
8JDL|1|w|A|175

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6

Chain AK

40S ribosomal protein S24