IL_8JDL_208

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_208 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.082

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8JDL|1|w|G|411
8JDL|1|w|G|412
8JDL|1|w|G|413
*
8JDL|1|w|C|424
8JDL|1|w|G|425
8JDL|1|w|A|426
8JDL|1|w|U|427
8JDL|1|w|OMU|428
8JDL|1|w|C|429

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 6

40S ribosomal protein S9

Chain AJ

40S ribosomal protein S23