IL_8JDL_215

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AG(OMG)GCAAGUC*GCU

Length

13 nucleotides

Bulged bases

8JDL|1|w|G|600, 8JDL|1|w|U|607

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|w|A|599
8JDL|1|w|G|600
8JDL|1|w|OMG|601
8JDL|1|w|G|602
8JDL|1|w|C|603
8JDL|1|w|A|604
8JDL|1|w|A|605
8JDL|1|w|G|606
8JDL|1|w|U|607
8JDL|1|w|C|608
*
8JDL|1|w|G|635
8JDL|1|w|C|636
8JDL|1|w|U|637

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S3

Chain 6

40S ribosomal protein S9

Chain AQ

40S ribosomal protein S30

Chain z

40S ribosomal protein S2