IL_8JDL_244

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

8JDL|1|w|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_244 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2307

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8JDL|1|w|C|1205
8JDL|1|w|G|1206
8JDL|1|w|G|1207
8JDL|1|w|A|1208
*
8JDL|1|w|U|1691
8JDL|1|w|PSU|1692
8JDL|1|w|G|1693

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain AM

40S ribosomal protein S26

Chain z

40S ribosomal protein S2