IL_8JDM_036
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AAGG*CAGCAGCACU
- Length
- 14 nucleotides
- Bulged bases
- 8JDM|1|D|A|932, 8JDM|1|D|C|934, 8JDM|1|D|C|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_036 not in the Motif Atlas
- Homologous match to IL_8GLP_037
- Geometric discrepancy: 0.155
- The information below is about IL_8GLP_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70469.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8JDM|1|D|A|732
8JDM|1|D|A|733
8JDM|1|D|G|734
8JDM|1|D|G|735
*
8JDM|1|D|C|928
8JDM|1|D|A|929
8JDM|1|D|G|930
8JDM|1|D|C|931
8JDM|1|D|A|932
8JDM|1|D|G|933
8JDM|1|D|C|934
8JDM|1|D|A|935
8JDM|1|D|C|936
8JDM|1|D|U|937
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain R
- 60S ribosomal protein L14
- Chain X
- 60S ribosomal protein L18a
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