IL_8JDM_053

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_053 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.1282

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8JDM|1|D|C|1431
8JDM|1|D|G|1432
8JDM|1|D|A|1433
8JDM|1|D|G|1434
*
8JDM|1|D|C|1450
8JDM|1|D|G|1451
8JDM|1|D|A|1452
8JDM|1|D|G|1453

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L18