IL_8JDM_068

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGGUAAA*UU(PSU)AAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|C|1732
8JDM|1|D|G|1733
8JDM|1|D|G|1734
8JDM|1|D|U|1735
8JDM|1|D|A|1736
8JDM|1|D|A|1737
8JDM|1|D|A|1738
*
8JDM|1|D|U|1790
8JDM|1|D|U|1791
8JDM|1|D|PSU|1792
8JDM|1|D|A|1793
8JDM|1|D|A|1794
8JDM|1|D|A|1795
8JDM|1|D|U|1796
8JDM|1|D|G|1797

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L5

Chain L

60S ribosomal protein L7

Chain O

60S ribosomal protein L10-like

Chain Y

60S ribosomal protein L21