IL_8JDM_119

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|C|3708
8JDM|1|D|U|3709
8JDM|1|D|G|3710
8JDM|1|D|A|3711
8JDM|1|D|A|3712
8JDM|1|D|U|3713
8JDM|1|D|G|3714
*
8JDM|1|D|C|3739
8JDM|1|D|G|3740
8JDM|1|D|C|3741
8JDM|1|D|G|3742

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain G

60S ribosomal protein L8

Chain w

Small subunit ribosomal RNA; SSU rRNA