IL_8JDM_122

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_122 not in the Motif Atlas

Geometric match to IL_2W2H_002

Geometric discrepancy: 0.221

The information below is about IL_2W2H_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_19557.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8JDM|1|D|G|3755
8JDM|1|D|A|3756
8JDM|1|D|G|3757
*
8JDM|1|D|C|3767
8JDM|1|D|PSU|3768
8JDM|1|D|C|3769

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain w

Small subunit ribosomal RNA; SSU rRNA