IL_8JDM_123

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_123 not in the Motif Atlas

Homologous match to IL_5TBW_089

Geometric discrepancy: 0.1137

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8JDM|1|D|G|3780
8JDM|1|D|C|3781
*
8JDM|1|D|G|3811
8JDM|1|D|C|3812
8JDM|1|D|A|3813
8JDM|1|D|U|3814

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain s

60S ribosomal protein L41