IL_8JDM_131

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8JDM|1|D|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_131 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0883

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8JDM|1|D|U|3927
8JDM|1|D|A|3928
8JDM|1|D|G|3929
*
8JDM|1|D|U|4181
8JDM|1|D|G|4182
8JDM|1|D|G|4183
8JDM|1|D|G|4184

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain G

60S ribosomal protein L8

Chain S

60S ribosomal protein L15

Chain t

60S ribosomal protein L36a