IL_8JDM_160

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

ACAU(PSU)U*ACCAU

Length

11 nucleotides

Bulged bases

8JDM|1|D|C|4670

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|A|4624
8JDM|1|D|C|4625
8JDM|1|D|A|4626
8JDM|1|D|U|4627
8JDM|1|D|PSU|4628
8JDM|1|D|U|4629
*
8JDM|1|D|A|4669
8JDM|1|D|C|4670
8JDM|1|D|C|4671
8JDM|1|D|A|4672
8JDM|1|D|U|4673

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain a

60S ribosomal protein L23

Chain b

60S ribosomal protein L24