IL_8JDM_162

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_162 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1446

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8JDM|1|D|U|4638
8JDM|1|D|G|4639
8JDM|1|D|C|4640
*
8JDM|1|D|G|4659
8JDM|1|D|G|4660
8JDM|1|D|G|4661

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain b

60S ribosomal protein L24

Chain i

60S ribosomal protein L31