IL_8JDM_208

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8JDM|1|w|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_208 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.1765

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8JDM|1|w|U|366
8JDM|1|w|U|367
8JDM|1|w|U|368
8JDM|1|w|C|369
8JDM|1|w|G|370
8JDM|1|w|A|371
*
8JDM|1|w|U|393
8JDM|1|w|G|394

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 5

40S ribosomal protein S8

Chain 8

40S ribosomal protein S11