IL_8JDM_216

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AG(OMG)GCAAGUC*GCU

Length

13 nucleotides

Bulged bases

8JDM|1|w|G|600, 8JDM|1|w|U|607

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|w|A|599
8JDM|1|w|G|600
8JDM|1|w|OMG|601
8JDM|1|w|G|602
8JDM|1|w|C|603
8JDM|1|w|A|604
8JDM|1|w|A|605
8JDM|1|w|G|606
8JDM|1|w|U|607
8JDM|1|w|C|608
*
8JDM|1|w|G|635
8JDM|1|w|C|636
8JDM|1|w|U|637

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S3

Chain 6

40S ribosomal protein S9

Chain A

mRNA

Chain AQ

40S ribosomal protein S30

Chain z

40S ribosomal protein S2