IL_8JDM_231

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8JDM|1|w|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_231 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1111

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8JDM|1|w|G|924
8JDM|1|w|G|925
8JDM|1|w|A|926
8JDM|1|w|C|927
*
8JDM|1|w|G|1014
8JDM|1|w|U|1015
8JDM|1|w|U|1016
8JDM|1|w|U|1017
8JDM|1|w|U|1018

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 9

40S ribosomal protein S13

Chain AN

40S ribosomal protein S27