IL_8JDM_237
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_237 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.106
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8JDM|1|w|C|1047
8JDM|1|w|G|1048
8JDM|1|w|A|1049
8JDM|1|w|A|1050
8JDM|1|w|G|1051
*
8JDM|1|w|C|1067
8JDM|1|w|G|1068
8JDM|1|w|U|1069
8JDM|1|w|A|1070
8JDM|1|w|G|1071
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S14
- Chain AM
- 40S ribosomal protein S26
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 60S ribosomal protein L8
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