IL_8JDM_241

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_241 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.1504

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8JDM|1|w|G|1108
8JDM|1|w|C|1109
8JDM|1|w|G|1110
*
8JDM|1|w|C|1123
8JDM|1|w|C|1124

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S17

Chain AN

40S ribosomal protein S27

Chain x

40S ribosomal protein SA

Chain y

40S ribosomal protein S3a