IL_8JDM_270
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- G(OMC)CC*GUA(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_270 not in the Motif Atlas
- Homologous match to IL_8P9A_453
- Geometric discrepancy: 0.0866
- The information below is about IL_8P9A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8JDM|1|w|G|1702
8JDM|1|w|OMC|1703
8JDM|1|w|C|1704
8JDM|1|w|C|1705
*
8JDM|1|w|G|1829
8JDM|1|w|U|1830
8JDM|1|w|A|1831
8JDM|1|w|6MZ|1832
8JDM|1|w|C|1833
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain B
- Transfer RNA; tRNA
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- 60S ribosomal protein L41
Coloring options: