IL_8JDM_300

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_300 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.061

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

8JDM|1|D|G|2847
8JDM|1|D|G|2848
8JDM|1|D|A|2849
8JDM|1|D|A|2850
8JDM|1|D|G|2851
8JDM|1|D|U|2852
8JDM|1|D|C|2853
8JDM|1|D|G|2854
8JDM|1|D|G|2855
*
8JDM|1|D|C|3837
8JDM|1|D|U|3838
8JDM|1|D|G|3839
8JDM|1|D|U|3840
8JDM|1|D|OMC|3841

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain a

60S ribosomal protein L23